ncempy.io package

ncempy.io.read(filename, dsetNum=0)

Parameters:

• filename (str or pathlib.Path) – The path and name of the file to attempt to load. This chooses the Reader() function based on the file suffix.

• dsetNum (int) – The data set number to load if there are multiple data sets in a file. This is implemented for EMD and DM files only.

Submodules

• ncempy.io.dectris module
  • dectrisReader()
  • fileDECTRIS
    • fileDECTRIS.getDataset()
    • fileDECTRIS.getMetadata()
    • fileDECTRIS.remove_bad_pixels()
• ncempy.io.dm module
  • dmReader()
  • fileDM
    • fileDM.allTags
    • fileDM.dataOffset
    • fileDM.dataShape
    • fileDM.dataSize
    • fileDM.dataType
    • fileDM.fid
    • fileDM.fileSize
    • fileDM.file_name
    • fileDM.file_path
    • fileDM.fromfile()
    • fileDM.getDataset()
    • fileDM.getMemmap()
    • fileDM.getMetadata()
    • fileDM.getSlice()
    • fileDM.getThumbnail()
    • fileDM.metadata
    • fileDM.numObjects
    • fileDM.on_memory
    • fileDM.origin
    • fileDM.parseHeader()
    • fileDM.scale
    • fileDM.scaleOrigin
    • fileDM.scaleUnit
    • fileDM.seek()
    • fileDM.tell()
    • fileDM.thumbnail
    • fileDM.verbose
    • fileDM.writeTags()
    • fileDM.xSize
    • fileDM.ySize
    • fileDM.zSize
    • fileDM.zSize2
• ncempy.io.emd module
  • NoEmdDataSets
  • UnsupportedEmdVersion
  • defaultDims()
  • emdReader()
  • emdWriter()
  • fileEMD
    • fileEMD.find_emdgroups()
    • fileEMD.getMetadata()
    • fileEMD.get_emddims()
    • fileEMD.get_emdgroup()
    • fileEMD.get_memmap()
    • fileEMD.put_comment()
    • fileEMD.put_emdgroup()
    • fileEMD.write_dim()
• ncempy.io.emdVelox module
  • emdVeloxReader()
  • fileEMDVelox
    • fileEMDVelox.getDataset()
    • fileEMDVelox.getMetadata()
    • fileEMDVelox.get_dataset()
    • fileEMDVelox.parseMetaData()
• ncempy.io.mrc module
  • appendData()
  • emd2mrc()
  • fileMRC
    • fileMRC.getDataset()
    • fileMRC.getMemmap()
    • fileMRC.getMetadata()
    • fileMRC.getSlice()
    • fileMRC.parseHeader()
  • mrc2emd()
  • mrc2raw()
  • mrcReader()
  • mrcWriter()
  • writeHeader()
• ncempy.io.ser module
  • NotSERError
  • fileSER
    • fileSER.getDataset()
    • fileSER.getMetadata()
    • fileSER.readHeader()
    • fileSER.writeEMD()
  • read_emi()
  • serReader()
• ncempy.io.smv module
  • fileSMV
    • fileSMV.getDataset()
    • fileSMV.getMetadata()
    • fileSMV.parseHeader()
    • fileSMV.readHeader()
  • smvReader()
  • smvWriter()